Fair enough, I'm not an expert PPF installer. I'll give you that.
But I am a decently accomplished engineer that has personally removed the spoiler on a CT4-V Blackwing with my own two hands. I can quite certainly say that the adhesive tape that is on the BW spoiler also functions as a watertight gasket to keep water from intruding through the spoiler bolt holes into the trunk cavity.
Unless your installer took care to completely remove the old tape (something that took me several painstaking hours to do with a hair dryer and Goo Gone) and cut an entirely new, seamless adhesive tape piece, they didn't match the GM Design Engineer's intent. (Another step which, again, took me several painstaking hours to recreate.)
Maybe you'll get water in your trunk, maybe you won't, but for anyone that hasn't removed their spoiler yet, it is most certainly not a necessity to remove it to have PPF installed (which I also had done) and you only add unnecessary risk to a perfectly functional apparatus by doing so.